The copyright of the following
publications has been transfered to the publisher. These articles may
be downloaded for personal use only. Any other use requires prior
permission of the author and/or publisher.
Journals
(18).
Deepak Karkala and Phaneendra
K.
Yalavarthy, "Data-Resolution
based Optimization of the
Data-Collection Strategy for Near Infrared Diffuse Optical Tomography,"
Medical Physics 2012 (revision submitted).
(17). Dilip M. Thomas, Phaneendra K. Yalavarthy, Deepak Karkala, and Vijay Natarajan, "Mesh simplification based on edge collapsing could improve computational efficiency in near infrared optical tomographic imaging," IEEE Journal of Selected Topics in Quantum Electronics (issue on Biophotonics) 18(4), 2012 (in press). [CODE]
(16). Sree Harsha Katamreddy and Phaneendra K. Yalavarthy, "Model-Resolution Based Regularization Improves Near Infrared Diffuse Optical Tomography," Journal of the Optical Society of America A: Optics, Imaging Science, and Vision 29(5), 649-656 (2012).
(17). Dilip M. Thomas, Phaneendra K. Yalavarthy, Deepak Karkala, and Vijay Natarajan, "Mesh simplification based on edge collapsing could improve computational efficiency in near infrared optical tomographic imaging," IEEE Journal of Selected Topics in Quantum Electronics (issue on Biophotonics) 18(4), 2012 (in press). [CODE]
(16). Sree Harsha Katamreddy and Phaneendra K. Yalavarthy, "Model-Resolution Based Regularization Improves Near Infrared Diffuse Optical Tomography," Journal of the Optical Society of America A: Optics, Imaging Science, and Vision 29(5), 649-656 (2012).
(15). Jaya
Prakash, Venkittarayan Chandrasekharan, Vishwajith Upendra, and Phaneendra K. Yalavarthy,
"Accelerating frequency-domain
diffuse optical tomographic image
reconstruction using graphics processing units," Journal of
Biomedical Optics 15(6), 066009 (2010). [CODE]
(14). Ravi P. K. Jagannath and Phaneendra K. Yalavarthy, “Approximation of Internal Refractive Index Variation Improves Image Guided Diffuse Optical Tomography of Breast,” IEEE Transactions on Biomedical Engineering 57(10), 2560-2563 (2010).
(13). M. S. Singh, Phaneendra K. Yalavarthy, R. M. Vasu, and K. Rajan, “Assessment of ultrasound modulation of near infrared light on the quantification of scattering coefficient,” Medical Physics 37(7), 3744-3751 (2010).
(12). Manuchehr Soleimani, Phaneendra K. Yalavarthy, and Hamid Dehghani, “Helmholtz-type regularization method for permittivity reconstruction using experimental phantom data of electrical capacitance tomography,” IEEE Transactions on Instrumentation and Measurement 59(1), 78-83 (2010).
(11). Saurabh Gupta, Phaneendra K. Yalavarthy, Debasish Roy, Daqing Piao, and Ram M. Vasu, “Singular Value Decomposition based computationally efficient algorithm for rapid dynamic near-infrared diffuse optical tomography,” Medical Physics 36(12), 5559-5567 (2009).
(10). Hamid Dehghani, Mathew. E. Eames, Phaneendra K. Yalavarthy, Scott C. Davis, Subhadra Srinivasan, Colin M. Carpenter, Brian W. Pogue, and Keith D. Paulsen, “Near Infrared Optical Tomography using NIRFAST: Algorithms for Numerical Model and Image Reconstruction Algorithms,” Communications in Numerical Methods in Engineering (Special Issue on Recent Advances in Computational Techniques for Biomedical Imaging) 25(6), 711-732 (2009).
(14). Ravi P. K. Jagannath and Phaneendra K. Yalavarthy, “Approximation of Internal Refractive Index Variation Improves Image Guided Diffuse Optical Tomography of Breast,” IEEE Transactions on Biomedical Engineering 57(10), 2560-2563 (2010).
(13). M. S. Singh, Phaneendra K. Yalavarthy, R. M. Vasu, and K. Rajan, “Assessment of ultrasound modulation of near infrared light on the quantification of scattering coefficient,” Medical Physics 37(7), 3744-3751 (2010).
(12). Manuchehr Soleimani, Phaneendra K. Yalavarthy, and Hamid Dehghani, “Helmholtz-type regularization method for permittivity reconstruction using experimental phantom data of electrical capacitance tomography,” IEEE Transactions on Instrumentation and Measurement 59(1), 78-83 (2010).
(11). Saurabh Gupta, Phaneendra K. Yalavarthy, Debasish Roy, Daqing Piao, and Ram M. Vasu, “Singular Value Decomposition based computationally efficient algorithm for rapid dynamic near-infrared diffuse optical tomography,” Medical Physics 36(12), 5559-5567 (2009).
(10). Hamid Dehghani, Mathew. E. Eames, Phaneendra K. Yalavarthy, Scott C. Davis, Subhadra Srinivasan, Colin M. Carpenter, Brian W. Pogue, and Keith D. Paulsen, “Near Infrared Optical Tomography using NIRFAST: Algorithms for Numerical Model and Image Reconstruction Algorithms,” Communications in Numerical Methods in Engineering (Special Issue on Recent Advances in Computational Techniques for Biomedical Imaging) 25(6), 711-732 (2009).
(9). Phaneendra
K. Yalavarthy, Daniel R. Lynch, Brian W. Pogue, Hamid Dehghani,
and Keith D. Paulsen, “Implementation
of a computationally efficient least-squares algorithm for highly
under-determined three-dimensional diffuse optical tomography problems,”
Medical
Physics 35(5),
1682-1697 (2008).
(8).
Subhadra Srinivasan, Brian W. Pogue,
Colin M. Carpenter, Phaneendra K.
Yalavarthy, and Keith D. Paulsen, “A boundary element approach for
image-guided near-infrared absorption and scatter estimation,”
Medical Physics 34(11), 4545-4557 (2007).
(7). Mathew. E. Eames, Brian W. Pogue, Phaneendra K. Yalavarthy, and Hamid Dehghani, “An efficient Jacobian reduction method for diffuse optical image reconstruction,” Optics Express 15(24), 15908-15919 (2007).
(6). Phaneendra K. Yalavarthy, Brian W. Pogue, Hamid Dehghani, Colin M. Carpenter, Shudong Jiang and Keith D. Paulsen, “Structural information within regularization matrices improves near infrared diffuse optical tomography,” Optics Express 15(13), 8043-8058 (2007).
(5). Andrew. L. Darling, Phaneendra K. Yalavarthy, Marvin M. Doyley, Hamid Dehghani, and Brian W. Pogue, “Interstitial fluid pressure in soft tissue as a result of externally applied contact pressure,” Physics in Medicine and Biology 52(14), 4121-4136 (2007).
(4). Phaneendra K. Yalavarthy, Brian W. Pogue, Hamid Dehghani, and Keith D. Paulsen, “Weight-Matrix Structured Regularization Provides Optimal Generalized Least-Squares Estimate in Diffuse Optical Tomography,” Medical Physics 34(6), 2085-2098 (2007).
(7). Mathew. E. Eames, Brian W. Pogue, Phaneendra K. Yalavarthy, and Hamid Dehghani, “An efficient Jacobian reduction method for diffuse optical image reconstruction,” Optics Express 15(24), 15908-15919 (2007).
(6). Phaneendra K. Yalavarthy, Brian W. Pogue, Hamid Dehghani, Colin M. Carpenter, Shudong Jiang and Keith D. Paulsen, “Structural information within regularization matrices improves near infrared diffuse optical tomography,” Optics Express 15(13), 8043-8058 (2007).
(5). Andrew. L. Darling, Phaneendra K. Yalavarthy, Marvin M. Doyley, Hamid Dehghani, and Brian W. Pogue, “Interstitial fluid pressure in soft tissue as a result of externally applied contact pressure,” Physics in Medicine and Biology 52(14), 4121-4136 (2007).
(4). Phaneendra K. Yalavarthy, Brian W. Pogue, Hamid Dehghani, and Keith D. Paulsen, “Weight-Matrix Structured Regularization Provides Optimal Generalized Least-Squares Estimate in Diffuse Optical Tomography,” Medical Physics 34(6), 2085-2098 (2007).
(3). Phaneendra
K. Yalavarthy, Hamid Dehghani, Brian W Pogue, and Keith D
Paulsen,
"Critical
computational aspects of near infrared circular tomographic
imaging: Analysis of measurement number, mesh resolution and
reconstruction basis," Optics Express 14, 6113-6127 (2006).
(2). Phaneendra
K. Yalavarthy, Kirtish Karlekar, H S Patel, R M Vasu, Manojit
Pramanik, P C Mathias, B Jain and P K Gupta, “Experimental investigation of
perturbation Monte-Carlo based derivative estimation for imaging
low-scattering tissue," Optics Express 13(3), 985-997 (2005).
(1). Phaneendra
K. Yalavarthy and R M Vasu, “Reconstruction
of optical properties of low-scattering tissue using derivative
estimated through perturbation Monte-Carlo method,” Journal of Biomedical Optics 9(5), 1002-1012 (2004).
Conference Proceedings
(15). N. Todd, J. Prakash, H. Odeen, J. de Bever, A. Payne, P. K. Yalavarthy, and D. L. Parker, "Towards real-time availability of 3-D temperature maps created with temporally constrained reconstruction", ISMRM 20th Annual Meeting 2012.
(14). R. P. K. Jagannath, P. K. Yalavarthy, "A semi-analytic method for continuous-wave diffuse optical tomography," SPIE/OSA European Conference on Biomedical Optics, May 22-26, 2011, Munich, Germany.
(13). P. K. Yalavarthy, D. A. Low, C. Noel, Z. Wei, D. Yang, A. Apte, J. Bradley, J. Deasy, and I. El Naqa, “Current role of PET in oncology: Potentials and challenges in the management of non-small cell lung cancer,” Proc. of IEEE 42nd Annual Asilomar Conference on Signals, Systems, and Computers (26-29 October 2008, Pacific Grove, California) 1067–1071 (2008). [invited paper]
(12). M. Soleimani, C. N. Mitchell, J. R. Tong, H. Dehghani, and P. K. Yalavarthy, “Regularization of electrical impedance tomography imaging using Helmholtz operator,” Proc. of Electrical Impedance Tomography Conference 2008 (EIT 2008, 16-18 June 2008, Hanover, New Hampshire), 163–166 (2008).
(11). M. E. Eames, B. W. Pogue, P. K. Yalavarthy, and H. Dehghani, “An efficient Jacobian reduction method for image reconstruction using Diffuse Optical Tomography,” Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), 16-19 March 2008.
(10). P. K. Yalavarthy, R. Langoju, B. Pogue, H. Dehghani, A. Patil, and K. Paulsen, “Cramer-Rao estimation of error limits for diffuse optical tomography with spatial prior information,” Proc. of SPIE 6434 (BiOS-2007 in Photonics West-2007, 20-25 January 2007, San Jose, California), 643403:1-13 (2007).
(9). S. C. Davis, H. Dehghani, P. K. Yalavarthy, B. W. Pogue, K. D. Paulsen, “Comparing two regularization techniques for diffuse optical tomography,” Proc. of SPIE 6434 (BiOS-2007 in Photonics West-2007, 20-25 January 2007, San Jose, California), 64340X:1-12 (2007).
(8). H. Dehghani, C. M. Carpenter, P. K. Yalavarthy, B. W. Pogue, and J. P. Culver, “Structural a-priori Information in near infrared optical tomography,” Proc. of SPIE 6431 (BiOS-2007 in Photonics West-2007, 20-25 January 2007, San Jose, California), 64310B:1-7 (2007).
(7). A. Darling, P. K. Yalavarthy, H. Dehghani, and B. W. Pogue, “Interstitial fluid pressure due to externally applied force in breast tissue,” Proc. of SPIE 6431 (BiOS-2007 in PhotonicsWest-2007, 20-25 January 2007, San Jose, California), 64310Z:1-10 (2007).
(6). Phaneendra K. Yalavarthy, Colin Carpenter, Shudong Jiang, Hamid Dehghani, Brian W. Pogue and Keith D. Paulsen, "Incorporation of MR structural information in diffuse optical tomography using Helmholtz type regularization", Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, 2006.
(5). Colin Carpenter, Brian W. Pogue, Phaneendra Yalavarthy, Scott Davis, Shudong Jiang, Hamid Dehghani and Keith D. Paulsen, "Analysis of 3-dimensional reconstruction in a MR-guided NIR tomography system", Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, 2006.
(4). Phaneendra K. Yalavarthy, Hamid Dehghani, Brian W. Pogue, and Keith D. Paulsen, “Measurement optimization for Near-Infrared optical tomography,” Proc. of SPIE 5693 (BiOS-2005 in Photonics West-2005, 22–27 January 2005, San Jose, California), p. 64-73, 2005.
(3). Daqing Piao, Shudong Jiang, Subhadra Srinivasan, Phaneendra K. Yalavarthy, Xiaomei Song, Brian W. Pogue, “Spectral-encoding for parallel source implementation in NIR tomography,” Proc. of SPIE 5693 (BiOS-2005 in Photonics West-2005, 22–27 January 2005, San Jose, California), p. 129-136, 2005.
(2). Phaneendra K. Yalavarthy, Kirtish Karlekar and R M Vasu, “Perturbation Monte-Carlo based derivative estimation for imaging transport regime tissue optical properties,” Proc. of SPIE 5486, p. 77-84, 2004.
(1). Phaneendra K. Yalavarthy and R M Vasu, “Perturbation Monte-Carlo based derivative estimation for imaging low-scattering inclusions in a heterogeneous tissue,” Proc. IEEE TENCON-2003:Conference on Convergent Technologies for Asia-Pacific Region, p. 529-533, 2003.
Conference Presentations
(12). P. K. Yalavarthy, Z. Wei, J. Wen, P. Parikh, T. Zhao, J. Bradley, and D. A. Low, "A spatially-based binning method for improving the quantitative accuracy of free-breathing PET/CT images," Int. J. Radiat. Oncol. Biol. Phys. 72 (ASTRO annual meeting 2008, 21-25 September 2008, Boston, Massachusetts), S613-S614 (2008).
(11). T. Zhao, J. Bradley, C. Noel, P. K. Yalavarthy, P. Parikh, T. Yang, D. Yang, S. Mutic, and D. A. Low, “Application of five-dimensional breathing motion model for monitoring radiation damage,” Med. Phys. 35 (American Association of Physicists in Medicine (AAPM) annual meeting 2008, 27-31 July 2008, Houston, Texas), 2877 (2008).
(10). P. K. Yalavarthy, B. Pogue, and H. Dehghani, “A generalized least-squares minimization method for near infrared diffuse optical tomography,” Department of Defense Era of Hope Meeting, Baltimore, Maryland 25-28 June 2008 (invited presentation).
(9). S. Srinivasan, B. W. Pogue, C. Carpenter, P. K. Yalavarthy, and K. D. Paulsen, “A Boundary Element Approach for Image-guided Near-Infrared Absorption and Scatter Estimation,” Network for Translational Research Optical Imaging Network (NTROI) Retreat, Hyatt Regency Newport Beach, CA, June 28-30, 2007.
(8). B. W. Pogue, C. M. Carpenter, P. K. Yalavarthy, S. C. Davis, J. Wang, and K. D. Paulsen, “Recovery of hemoglobin images from MR-guided NIR spectroscopy,” SPIE Medical Imaging-2007, San Diego, California, 17-22 February 2007.
(7). B. W. Pogue, C. M. Carpenter, P. K. Yalavarthy, H. Dehghani, S. Jiang, X. Wang, W. A. Wells, C. A. Kogel, S. P. Poplack, J. B. Weaver, and K. D. Paulsen, “Proposed methods to improve false positive and false negative rates in MR breast imaging, through combination with NIR broadband spectroscopy/tomography,” BiOS-2007 in Photonics West-2007, San Jose, California, 20-25 January 2007 (invited presentation).
(6). P. K. Yalavarthy, B. W. Pogue, H. Dehghani, S. Jiang, and K. D. Paulsen, “Generalized Least-Squares minimization for Magnetic Resonance guided Diffuse Optical Tomography,” BiOS-2007 in Photonics West-2007, San Jose, California, 20-25 January 2007.
(5). P. K. Yalavarthy, B. W. Pogue, H. Dehghani, S. Jiang, and K. D. Paulsen, “Outline of the Weighted Least-Squares minimization for Diffuse Optical Tomography,” Network for Translational Research Optical Imaging Network (NTROI) Retreat, Hyatt Regency Newport Beach, CA, June 22-24, 2006.
(4). P. K. Yalavarthy, K. Karlekar, and R. M. Vasu, “Design of a time-domain optical tomography imager for imaging tissue with low-scattering coefficient,” Int. Conf. on Laser Applications and Optical Metrology (ICLAOM-03), IIT Delhi, India, Dec. 1-4, 2003.
(3). P. K. Yalavarthy and R. M. Vasu, “Optical inhomogeneity reconstruction in tissue with low scattering inclusions using derivative estimated through perturbation MonteCarlo,” National Symposium on Engg. Optics (NSEO-03), Meerut College, Meerut, India, April-2003.
(2). P. K. Yalavarthy, “Perturbation Monte-Carlo (pMC) Technique: A novel Imaging modality in optical tomography,” Lamp-Workshop, Winter college on bio-photonics, ICTP, Trieste, Italy, February 10-21, 2003.
(1). R. M. Vasu and P. K. Yalavarthy, “Efficient calculation of Jacobian for solving the inverse photon transport problem in the tissue,” Conference on Optics and Photonics in Engineering (COPE-03), New Delhi, India, Jan-2003.
Technical Reports
(4). Colin Carpenter and Phaneendra K. Yalavarthy, “2-D Plotting of Finite Difference or Finite Element Solutions with Tecplot,” NML Lab Report, NML-07-1, Dartmouth College, February 2007.
(3). Phaneendra K. Yalavarthy, “Derivation of an alternative form for generalized least-squares update equation in Diffuse Optical Tomography,” NML Lab Report, NML-06-10, Dartmouth College, July 2006.
(2). Phaneendra K. Yalavarthy and Daniel R. Lynch, “Generalized Least-Squares minimization for Diffuse Optical Tomography: Use of Complex data,” NML Lab Report, NML-06-9, Dartmouth College, July 2006.
(1). Phaneendra K. Yalavarthy, Phillip R. Perrinez, and Keith D. Paulsen, “Integration formulas for tetrahedral element,” NML Lab Report, NML-06-8, Dartmouth College, May 2006.
Theses
(3). Phaneendra K. Yalavarthy, “A generalized least-squares minimization method for near infrared diffuse optical tomography," Ph.D. Thesis, Dartmouth College, Hanover, September 2007.
(2). Phaneendra K. Yalavarthy, “Diffuse optical tomographic reconstruction in low-scattering tissue: development of inversion algorithms based on Monte-Carlo simulation," M.Sc.(Engg.) thesis, Indian Institute of Science, Bangalore, India, January 2004.
(1). Phaneendra K. Yalavarthy, “Precision measurements of energies and intensities of gamma transitions in the electron capture decay of 75Se using large volume HPGe-detector," M.Sc. dissertation, Sri Sathya Sai Institute of Higher Learning, Prasanthi Nilayam, India, March 2001.
Letters
(1). Phaneendra K. Yalavarthy, “Ultrasound Imaging: a boon or bane?,” Current Science 88(7), p. 1019, April 10, 2005.
Conference Proceedings
(15). N. Todd, J. Prakash, H. Odeen, J. de Bever, A. Payne, P. K. Yalavarthy, and D. L. Parker, "Towards real-time availability of 3-D temperature maps created with temporally constrained reconstruction", ISMRM 20th Annual Meeting 2012.
(14). R. P. K. Jagannath, P. K. Yalavarthy, "A semi-analytic method for continuous-wave diffuse optical tomography," SPIE/OSA European Conference on Biomedical Optics, May 22-26, 2011, Munich, Germany.
(13). P. K. Yalavarthy, D. A. Low, C. Noel, Z. Wei, D. Yang, A. Apte, J. Bradley, J. Deasy, and I. El Naqa, “Current role of PET in oncology: Potentials and challenges in the management of non-small cell lung cancer,” Proc. of IEEE 42nd Annual Asilomar Conference on Signals, Systems, and Computers (26-29 October 2008, Pacific Grove, California) 1067–1071 (2008). [invited paper]
(12). M. Soleimani, C. N. Mitchell, J. R. Tong, H. Dehghani, and P. K. Yalavarthy, “Regularization of electrical impedance tomography imaging using Helmholtz operator,” Proc. of Electrical Impedance Tomography Conference 2008 (EIT 2008, 16-18 June 2008, Hanover, New Hampshire), 163–166 (2008).
(11). M. E. Eames, B. W. Pogue, P. K. Yalavarthy, and H. Dehghani, “An efficient Jacobian reduction method for image reconstruction using Diffuse Optical Tomography,” Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), 16-19 March 2008.
(10). P. K. Yalavarthy, R. Langoju, B. Pogue, H. Dehghani, A. Patil, and K. Paulsen, “Cramer-Rao estimation of error limits for diffuse optical tomography with spatial prior information,” Proc. of SPIE 6434 (BiOS-2007 in Photonics West-2007, 20-25 January 2007, San Jose, California), 643403:1-13 (2007).
(9). S. C. Davis, H. Dehghani, P. K. Yalavarthy, B. W. Pogue, K. D. Paulsen, “Comparing two regularization techniques for diffuse optical tomography,” Proc. of SPIE 6434 (BiOS-2007 in Photonics West-2007, 20-25 January 2007, San Jose, California), 64340X:1-12 (2007).
(8). H. Dehghani, C. M. Carpenter, P. K. Yalavarthy, B. W. Pogue, and J. P. Culver, “Structural a-priori Information in near infrared optical tomography,” Proc. of SPIE 6431 (BiOS-2007 in Photonics West-2007, 20-25 January 2007, San Jose, California), 64310B:1-7 (2007).
(7). A. Darling, P. K. Yalavarthy, H. Dehghani, and B. W. Pogue, “Interstitial fluid pressure due to externally applied force in breast tissue,” Proc. of SPIE 6431 (BiOS-2007 in PhotonicsWest-2007, 20-25 January 2007, San Jose, California), 64310Z:1-10 (2007).
(6). Phaneendra K. Yalavarthy, Colin Carpenter, Shudong Jiang, Hamid Dehghani, Brian W. Pogue and Keith D. Paulsen, "Incorporation of MR structural information in diffuse optical tomography using Helmholtz type regularization", Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, 2006.
(5). Colin Carpenter, Brian W. Pogue, Phaneendra Yalavarthy, Scott Davis, Shudong Jiang, Hamid Dehghani and Keith D. Paulsen, "Analysis of 3-dimensional reconstruction in a MR-guided NIR tomography system", Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, 2006.
(4). Phaneendra K. Yalavarthy, Hamid Dehghani, Brian W. Pogue, and Keith D. Paulsen, “Measurement optimization for Near-Infrared optical tomography,” Proc. of SPIE 5693 (BiOS-2005 in Photonics West-2005, 22–27 January 2005, San Jose, California), p. 64-73, 2005.
(3). Daqing Piao, Shudong Jiang, Subhadra Srinivasan, Phaneendra K. Yalavarthy, Xiaomei Song, Brian W. Pogue, “Spectral-encoding for parallel source implementation in NIR tomography,” Proc. of SPIE 5693 (BiOS-2005 in Photonics West-2005, 22–27 January 2005, San Jose, California), p. 129-136, 2005.
(2). Phaneendra K. Yalavarthy, Kirtish Karlekar and R M Vasu, “Perturbation Monte-Carlo based derivative estimation for imaging transport regime tissue optical properties,” Proc. of SPIE 5486, p. 77-84, 2004.
(1). Phaneendra K. Yalavarthy and R M Vasu, “Perturbation Monte-Carlo based derivative estimation for imaging low-scattering inclusions in a heterogeneous tissue,” Proc. IEEE TENCON-2003:Conference on Convergent Technologies for Asia-Pacific Region, p. 529-533, 2003.
Conference Presentations
(12). P. K. Yalavarthy, Z. Wei, J. Wen, P. Parikh, T. Zhao, J. Bradley, and D. A. Low, "A spatially-based binning method for improving the quantitative accuracy of free-breathing PET/CT images," Int. J. Radiat. Oncol. Biol. Phys. 72 (ASTRO annual meeting 2008, 21-25 September 2008, Boston, Massachusetts), S613-S614 (2008).
(11). T. Zhao, J. Bradley, C. Noel, P. K. Yalavarthy, P. Parikh, T. Yang, D. Yang, S. Mutic, and D. A. Low, “Application of five-dimensional breathing motion model for monitoring radiation damage,” Med. Phys. 35 (American Association of Physicists in Medicine (AAPM) annual meeting 2008, 27-31 July 2008, Houston, Texas), 2877 (2008).
(10). P. K. Yalavarthy, B. Pogue, and H. Dehghani, “A generalized least-squares minimization method for near infrared diffuse optical tomography,” Department of Defense Era of Hope Meeting, Baltimore, Maryland 25-28 June 2008 (invited presentation).
(9). S. Srinivasan, B. W. Pogue, C. Carpenter, P. K. Yalavarthy, and K. D. Paulsen, “A Boundary Element Approach for Image-guided Near-Infrared Absorption and Scatter Estimation,” Network for Translational Research Optical Imaging Network (NTROI) Retreat, Hyatt Regency Newport Beach, CA, June 28-30, 2007.
(8). B. W. Pogue, C. M. Carpenter, P. K. Yalavarthy, S. C. Davis, J. Wang, and K. D. Paulsen, “Recovery of hemoglobin images from MR-guided NIR spectroscopy,” SPIE Medical Imaging-2007, San Diego, California, 17-22 February 2007.
(7). B. W. Pogue, C. M. Carpenter, P. K. Yalavarthy, H. Dehghani, S. Jiang, X. Wang, W. A. Wells, C. A. Kogel, S. P. Poplack, J. B. Weaver, and K. D. Paulsen, “Proposed methods to improve false positive and false negative rates in MR breast imaging, through combination with NIR broadband spectroscopy/tomography,” BiOS-2007 in Photonics West-2007, San Jose, California, 20-25 January 2007 (invited presentation).
(6). P. K. Yalavarthy, B. W. Pogue, H. Dehghani, S. Jiang, and K. D. Paulsen, “Generalized Least-Squares minimization for Magnetic Resonance guided Diffuse Optical Tomography,” BiOS-2007 in Photonics West-2007, San Jose, California, 20-25 January 2007.
(5). P. K. Yalavarthy, B. W. Pogue, H. Dehghani, S. Jiang, and K. D. Paulsen, “Outline of the Weighted Least-Squares minimization for Diffuse Optical Tomography,” Network for Translational Research Optical Imaging Network (NTROI) Retreat, Hyatt Regency Newport Beach, CA, June 22-24, 2006.
(4). P. K. Yalavarthy, K. Karlekar, and R. M. Vasu, “Design of a time-domain optical tomography imager for imaging tissue with low-scattering coefficient,” Int. Conf. on Laser Applications and Optical Metrology (ICLAOM-03), IIT Delhi, India, Dec. 1-4, 2003.
(3). P. K. Yalavarthy and R. M. Vasu, “Optical inhomogeneity reconstruction in tissue with low scattering inclusions using derivative estimated through perturbation MonteCarlo,” National Symposium on Engg. Optics (NSEO-03), Meerut College, Meerut, India, April-2003.
(2). P. K. Yalavarthy, “Perturbation Monte-Carlo (pMC) Technique: A novel Imaging modality in optical tomography,” Lamp-Workshop, Winter college on bio-photonics, ICTP, Trieste, Italy, February 10-21, 2003.
(1). R. M. Vasu and P. K. Yalavarthy, “Efficient calculation of Jacobian for solving the inverse photon transport problem in the tissue,” Conference on Optics and Photonics in Engineering (COPE-03), New Delhi, India, Jan-2003.
Technical Reports
(4). Colin Carpenter and Phaneendra K. Yalavarthy, “2-D Plotting of Finite Difference or Finite Element Solutions with Tecplot,” NML Lab Report, NML-07-1, Dartmouth College, February 2007.
(3). Phaneendra K. Yalavarthy, “Derivation of an alternative form for generalized least-squares update equation in Diffuse Optical Tomography,” NML Lab Report, NML-06-10, Dartmouth College, July 2006.
(2). Phaneendra K. Yalavarthy and Daniel R. Lynch, “Generalized Least-Squares minimization for Diffuse Optical Tomography: Use of Complex data,” NML Lab Report, NML-06-9, Dartmouth College, July 2006.
(1). Phaneendra K. Yalavarthy, Phillip R. Perrinez, and Keith D. Paulsen, “Integration formulas for tetrahedral element,” NML Lab Report, NML-06-8, Dartmouth College, May 2006.
Theses
(3). Phaneendra K. Yalavarthy, “A generalized least-squares minimization method for near infrared diffuse optical tomography," Ph.D. Thesis, Dartmouth College, Hanover, September 2007.
(2). Phaneendra K. Yalavarthy, “Diffuse optical tomographic reconstruction in low-scattering tissue: development of inversion algorithms based on Monte-Carlo simulation," M.Sc.(Engg.) thesis, Indian Institute of Science, Bangalore, India, January 2004.
(1). Phaneendra K. Yalavarthy, “Precision measurements of energies and intensities of gamma transitions in the electron capture decay of 75Se using large volume HPGe-detector," M.Sc. dissertation, Sri Sathya Sai Institute of Higher Learning, Prasanthi Nilayam, India, March 2001.
Letters
(1). Phaneendra K. Yalavarthy, “Ultrasound Imaging: a boon or bane?,” Current Science 88(7), p. 1019, April 10, 2005.